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Dr. Harsh J Shah

Stomach Cancer Risk: The Germ, the Salt and Your Genes

Last updated: 23-Oct-2026

Dr Harsh Shah, stomach cancer surgeon, Ahmedabad

Dr Harsh Shah
MS, MCh (Surgical Gastroenterology), DrNB (Surgical Gastroenterology)
Registered with Gujarat Medical Council, Reg. No. G-38738
Stomach Cancer Surgeon
Apollo Hospital, Bhat, Gandhinagar · Gota OPD, Ahmedabad · 18 years of experience
★★★★★ Google: 4.89 from 216 reviews (Gota clinic) · 4.94 from 18 reviews (Apollo, Bhat)

In short

Most stomach cancer is not inherited. It grows after years of damage to the stomach lining, mostly caused by the germ H. pylori, with salt and tobacco adding to it.

A small share of stomach cancer runs in families. The clearest example is the CDH1 gene, which causes diffuse stomach cancer young and lobular breast cancer in women.

Treating H. pylori lowers the risk. A family with a strong pattern of stomach cancer should see a genetic counsellor, because a blood test can show who needs closer care.

How stomach cancer is tested, staged and treated, from the first endoscopy to the operation, is set out on the stomach cancer treatment in Ahmedabad page.

What raises the risk of stomach cancer

Most risk factors are things around us that build up over many years. A few are genes passed down in a family. Having one does not mean cancer will come.

Many people with stomach cancer had no risk factor that they knew of.

Doctors think of the lower stomach and the upper stomach as two slightly different diseases. Cancer of the lower and middle stomach is linked mainly to H. pylori and diet. Cancer at the top, where the food pipe joins the stomach, is linked more to acid reflux and to being overweight.

H. pylori, the germ behind most cases

Helicobacter pylori is a germ that lives in the stomach lining. It is usually caught in childhood, from food, water or close contact, and it stays for life unless it is treated. Many adults in India carry it without knowing.

Over decades, H. pylori keeps the lining inflamed. The lining thins, then changes to look like bowel lining. In a few people, abnormal cells and then cancer follow.

Doctors call these steps atrophic gastritis, intestinal metaplasia and dysplasia. You may see these words on a biopsy report.

  • Most people with H. pylori never get stomach cancer. Most stomach cancers of the lower stomach, though, started with it.
  • Some strains of the germ are more harmful than others.
  • Treating it with a short course of antibiotics and an acid medicine lowers the risk of stomach cancer, in trials from Asia and elsewhere.
  • The gain is largest when it is treated early, before the lining has thinned or changed.

A breath test, a stool test or a biopsy during endoscopy can show the germ. After treatment, a second test is done to make sure it has gone, because it does not always clear the first time.

Salt, smoked food and what is on the plate

Food preserved with a lot of salt, or by smoking or drying, forms chemicals that can harm the stomach lining. Salt also makes it easier for H. pylori to do damage.

  • Raise the risk: salted fish, smoked meat, dried and salted foods, and pickles made with a lot of salt, eaten often and over many years.
  • Lower the risk: fresh fruit and vegetables, food with fibre, and foods with vitamin C.

A pickle with a meal now and then is not the problem. What matters is a diet high in salt and preserved food, day after day, for decades. A refrigerator in the house, which replaced salting as the way to keep food, is one reason stomach cancer has become less frequent across the world.

Smoking, alcohol and body weight

Tobacco raises the risk of stomach cancer, whether it is smoked or chewed. It also adds to the harm done by H. pylori. Stopping lowers the risk over time.

Heavy drinking adds a little risk. The link is weaker than for cancer of the food pipe. Being overweight, and long-standing acid reflux, raise the risk of cancer at the top of the stomach and the joint with the food pipe, more than in the rest of the stomach.

Old stomach operations and other conditions

A few medical conditions raise the risk enough that doctors suggest regular endoscopy.

  • A part of the stomach removed long ago. People who had part of the stomach removed for an ulcer, many years earlier, can develop cancer in the part that remains. Bile flowing back into the stomach slowly damages it. The risk shows after fifteen to twenty years, and an endoscopy every year or two is suggested after the first ten.
  • Pernicious anaemia. In this condition, the body attacks the lining that makes acid and absorbs vitamin B12. The lining thins, and the risk of stomach cancer rises. An endoscopy every few years is often advised.
  • Intestinal metaplasia or dysplasia on a biopsy. These are the changed linings on the path to cancer. Dysplasia, in particular, needs treatment or close watch.
  • Epstein-Barr virus. The virus that causes glandular fever is found inside some stomach cancers. It changes how the cancer behaves and how it responds to immunotherapy, but it is not something a person can avoid.

When stomach cancer runs in the family

Most families with one case of stomach cancer do not carry a cancer gene. They often share the same germ, kitchen and habits. An unusual pattern points to a gene.

These are the signs that point to a gene:

  • Two or more close relatives with stomach cancer, especially if one was under 50.
  • Stomach cancer of the diffuse or signet ring type in someone under 40.
  • Diffuse stomach cancer and lobular breast cancer in the same family.
  • Stomach cancer alongside bowel or womb cancer in the family, which can point to Lynch syndrome.
  • Many polyps in the stomach or bowel, in the patient or relatives.

A family tree drawn at the consultation, going back two or three generations, is often the most useful single test. Write down who had which cancer, and at what age, before you come.

The CDH1 gene and diffuse stomach cancer

The CDH1 gene makes E-cadherin, a protein that holds stomach cells together. When one copy of the gene is faulty from birth, the condition is called hereditary diffuse gastric cancer.

  • It is passed from parent to child, and each child has an even chance of inheriting it.
  • It causes diffuse, signet ring type stomach cancer, often at a young age.
  • Women who carry it also have a high risk of lobular breast cancer.
  • Cleft lip or palate is seen in some of these families.

CDH1 cancer starts as tiny groups of cells hidden under a normal-looking lining, and endoscopy often misses them. That is why an operation before cancer starts is offered.

A second gene, CTNNA1, causes a milder form of the same condition. Its carriers are usually offered regular endoscopy rather than an operation.

Removing the stomach before cancer starts

For a CDH1 carrier, removing the whole stomach before cancer starts is called a prophylactic total gastrectomy. It is usually offered between the ages of 20 and 30.

It may be advised a few years younger than the youngest relative who had stomach cancer.

It is a big decision, and it is never rushed. The person meets the surgeon, a genetic counsellor and a dietitian, often more than once.

  • The food pipe is joined to the small bowel, so food still passes normally.
  • Smaller, more frequent meals are needed for life, and weight usually drops at first.
  • Vitamin B12 injections, and checks of iron, calcium and vitamin D, continue for life.
  • Because no cancer is present yet, the wide gland removal of a cancer operation is not needed.
  • Some people choose yearly endoscopy with many biopsies for a time instead, knowing it can miss early cancer.

Women who carry CDH1 also need breast checks with yearly MRI from about the age of 30, organised with a breast specialist.

Lynch syndrome and the polyp syndromes

Several other inherited conditions raise the risk of stomach cancer, though less than CDH1. In each of them, the stomach is only part of the picture.

Other inherited conditions that raise the risk of stomach cancer
ConditionGeneWhat it means for the stomach
Lynch syndromeMLH1, MSH2, MSH6, PMS2Mainly bowel and womb cancer; stomach cancer risk rises too, so endoscopy every few years from the 30s is advised in many families
Familial adenomatous polyposis (FAP)APCMany stomach polyps, mostly harmless; the ones with abnormal cells are removed at regular endoscopy
Peutz-Jeghers syndromeSTK11Polyps through the gut and dark spots on the lips; endoscopy starts in childhood
Juvenile polyposisSMAD4, BMPR1ACan fill the stomach with polyps; removal of the stomach is sometimes needed when they cannot be controlled
Li-Fraumeni syndrome, BRCA2TP53, BRCA2A smaller rise in stomach cancer risk; other cancers matter more

Some families have several cases of the intestinal type of stomach cancer, with no gene found. Their relatives are watched based on the family history alone.

Who should be offered a genetic test

A genetic test is a blood or saliva test for a faulty gene passed down in the family. It should start with the person who has, or had, the cancer.

If a change is found, relatives can then be tested for that one change.

  1. Anyone with diffuse stomach cancer under the age of 40.
  2. A family with two or more stomach cancers, one of them diffuse, or one under 50.
  3. A family with both diffuse stomach cancer and lobular breast cancer.
  4. A stomach cancer that shows MMR loss or MSI-high on the biopsy, where Lynch syndrome is possible.
  5. Anyone with many stomach or bowel polyps.

The test is done after a talk with a genetic counsellor. The counsellor explains what a positive, negative or unclear result would mean for you, your children, and your brothers and sisters, before any blood is taken.

What you can do about your own risk

  • If an endoscopy or test shows H. pylori, finish the full course of treatment, then have the repeat test to confirm it has gone.
  • Stop tobacco in every form.
  • Eat less salted, smoked and preserved food, and more fresh fruit and vegetables.
  • If a close relative had stomach cancer, tell your doctor, and ask whether an endoscopy is right for you.
  • Do not ignore warning signs: weight loss, vomiting, black stools, trouble swallowing, or acidity that keeps coming back after the age of 45.

Questions to ask at the consultation

  • Does the pattern of cancer in my family suggest an inherited gene?
  • Should I, or my relative with cancer, see a genetic counsellor?
  • Do I have H. pylori, and has it gone after treatment?
  • Do I need an endoscopy now, and how often after that?

Frequently asked questions

What is the main cause of stomach cancer?

In most people it is long-standing infection with a germ called H. pylori, which keeps the stomach lining inflamed for decades. Salty and smoked food and tobacco add to the damage.

Does treating H. pylori lower the risk of stomach cancer?

Yes. Treating it with antibiotics and an acid medicine lowers the risk, and the gain is larger when it is treated before the lining has thinned or changed. A repeat test confirms it has gone.

Is stomach cancer hereditary?

Most stomach cancer is not. A small share runs in families, through genes such as CDH1, the Lynch syndrome genes and the polyp syndrome genes. An unusual family pattern is the clue.

What is hereditary diffuse gastric cancer?

It is an inherited condition, usually caused by a change in the CDH1 gene. It causes diffuse stomach cancer at a young age and, in women, lobular breast cancer. Each child of a carrier has an even chance of inheriting it.

Why is the stomach removed in people with a CDH1 gene change?

Because CDH1 cancer starts as tiny hidden groups of cells that endoscopy often misses. Removing the whole stomach, usually between 20 and 30, takes away the risk before cancer starts.

Should my family have a genetic test if a relative had stomach cancer?

Not always. A test is suggested for diffuse cancer under 40, two or more stomach cancers in close relatives, stomach and lobular breast cancer together, or a report showing MMR loss. A genetic counsellor helps decide.

Where Dr Harsh Shah sees patients and operates

Shah’s Gastro, Cancer & Robotic Surgery Centre, Gota, Ahmedabad

Consultation, review of endoscopy and biopsy reports, family history assessment, second opinions and follow-up.

+91-63555-64601 · Directions to the Gota clinic

Apollo Hospital, Bhat, Gandhinagar

Apollo Hospital International Limited, GIDC Bhat Industrial Estate, Bhat, Gandhinagar. Endoscopy and biopsy, CT scans, stomach cancer surgery including total gastrectomy, and inpatient care.

WhatsApp +91-63555-64601 · Directions to Apollo, Bhat

Has a parent, brother or sister had stomach cancer, and you want to know what it means for you? Or has an endoscopy shown H. pylori or changes in the stomach lining? The reports can be sent ahead on WhatsApp, so the consultation starts with them already read. What you need is decided at the consultation, after examination. Call +91-63555-64601 Send your reports before the visit

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Dr. Harsh J Shah
Dr Harsh Shah - Surgical Gastroenterologist and GI Robotic Surgeon, Ahmedabad
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